Trifidus
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Trifidus is an implementation of the MVC design pattern in PHP.
What is MVC?
MVC is a design pattern that makes the separation of controller, view and model possible. Each component is being stored in its own file or folder and can be altered separately.
This separation makes it possible to completely change the layout of the website (even beyond the possibilities of CSS) later without having to search for the layout in thousands of lines of controller-code. Besides, you could also change the storage of the application and switch from direct MySQL implementation to another database abstraction layer.